Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc38a8Solute carrier family 38 member 8a. (445 aa)    
Predicted Functional Partners:
gan
Gigaxonin.
      
 0.713
svopl
SVOP-like.
      
 0.684
bloc1s3
Biogenesis of lysosome-related organelles complex 1 subunit 3; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO). Belongs to the BLOC1S3 family.
      
 0.678
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
 0.648
ENSPFOP00000019575
Ras-related GTP binding A.
    
 0.643
LOC103143494
Zinc finger and BTB domain containing 22a.
     
 0.596
ENSPFOP00000026456
Zinc finger and BTB domain containing 22b.
     
 0.596
ENSPFOP00000002427
Activating signal cointegrator 1 complex subunit 3.
      
 0.575
LOC103138713
Solute carrier family 7 member 3a.
      
 0.574
LOC103153223
Solute carrier family 38 member 9.
      
 0.570
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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