Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sympkSymplekin. (1216 aa)    
Predicted Functional Partners:
ENSPFOP00000011809
WD repeat domain 33.
    
 0.999
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.999
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.999
LOC103137772
FIP1 like 1b (S. cerevisiae).
   
 0.998
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.996
LOC103146800
Cleavage and polyadenylation specific factor 3.
   
 0.996
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.995
CSTF2T
Cleavage stimulation factor subunit 2 tau variant.
    
 0.995
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.995
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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