Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103153801CCCTC-binding factor (zinc finger protein). (757 aa)    
Predicted Functional Partners:
ENSPFOP00000004704
Structural maintenance of chromosomes protein.
   
 
 0.877
ENSPFOP00000002611
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.846
LOC103137767
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.826
LOC103146910
VEFS-Box domain-containing protein.
   
 0.826
rpl31
Ribosomal protein L31.
    
   0.790
ENSPFOP00000001884
Pumilio RNA-binding family member 3.
    
   0.769
LOC103144500
Ribosomal protein L26.
    
   0.763
rpl14
Ribosomal protein L14.
    
   0.755
ENSPFOP00000001295
Ribosomal protein L10.
    
   0.754
LOC103137300
Nucleophosmin 1b.
    
 
 0.744
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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