Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmt9btRNA methyltransferase 9B. (427 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.972
ENSPFOP00000000026
NIN1 (RPN12) binding protein 1 homolog.
   
 0.795
ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.
  
 0.784
ENSPFOP00000005988
RUN and FYVE domain containing 3.
    
   0.772
ENSPFOP00000029082
SPT20 homolog, SAGA complex component.
    
 
 0.757
ENSPFOP00000020167
Si:dkey-94e7.1.
      
 0.739
LOC103155772
NME/NM23 family member 8; Belongs to the NDK family.
  
 
 0.738
trmt11
tRNA methyltransferase 11 homolog.
   
 
 0.734
epdr1
Ependymin related 1.
      
 0.723
ENSPFOP00000001935
Potassium channel, subfamily K, member 18; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.718
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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