STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001500WD_REPEATS_REGION domain-containing protein. (1735 aa)    
Predicted Functional Partners:
ENSPFOP00000030013
Glutamate-rich 3.
   
  0.833
ENSPFOP00000010739
WD repeat domain 19.
   
 0.812
LOC103155071
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.799
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.784
ENSPFOP00000002806
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.783
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.782
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
   
 0.782
ENSPFOP00000017575
Testis expressed 10.
   
 0.782
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.777
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.775
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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