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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMOtRNA methyltransferase O. (320 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
    
  0.666
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
    
  0.636
ENSPFOP00000018717
Deoxythymidylate kinase (thymidylate kinase).
    
  0.636
ENSPFOP00000009981
Triosephosphate isomerase.
    
  0.617
tpi1
Triosephosphate isomerase.
    
  0.617
LOC103155772
NME/NM23 family member 8; Belongs to the NDK family.
    
  0.551
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
    
  0.549
mrps34
Mitochondrial ribosomal protein S34.
    
  0.549
nme3
Nucleoside diphosphate kinase.
    
  0.549
nme5
NME/NM23 family member 5; Belongs to the NDK family.
    
  0.549
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.