Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc41Uncharacterized protein. (651 aa)    
Predicted Functional Partners:
drg1
Developmentally regulated GTP binding protein 1.
   
   0.903
ENSPFOP00000008670
Neuralized E3 ubiquitin protein ligase 4.
     
 0.842
asb13
Uncharacterized protein.
     
 0.813
ELOB
Elongin B.
    
 0.778
ENSPFOP00000013383
Elongin B.
    
 0.778
gemin8
Gem (nuclear organelle) associated protein 8.
      
 0.714
suox
Sulfite oxidase.
      
 0.713
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.704
LOC103151796
Uncharacterized protein.
     
 0.703
cul5
Cullin 5; Belongs to the cullin family.
    
 0.701
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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