PDZD4 protein (Poecilia formosa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

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[Homology]

Score

PDZD4

PDZ domain containing 4. (835 aa)

Predicted Functional Partners:

apip

0.765

cep131

0.729

ENSPFOP00000026365

0.615

ENSPFOP00000001899

0.560

dcaf5

0.545

ACTN4

0.545

LOC103133606

0.545

ENSPFOP00000022682

0.545

taf3

0.503

pipox

0.493

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTN4	PDZD4	ENSPFOP00000017666	ENSPFOP00000001510	Actinin alpha 4.	PDZ domain containing 4.	0.545
ACTN4	dcaf5	ENSPFOP00000017666	ENSPFOP00000017407	Actinin alpha 4.	Actinin, alpha 1.	0.900
ENSPFOP00000001899	PDZD4	ENSPFOP00000001899	ENSPFOP00000001510	MARVEL domain containing 1.	PDZ domain containing 4.	0.560
ENSPFOP00000022682	LOC103133606	ENSPFOP00000022682	ENSPFOP00000018668	Actinin alpha 3b.	Actinin, alpha 2b.	0.900
ENSPFOP00000022682	PDZD4	ENSPFOP00000022682	ENSPFOP00000001510	Actinin alpha 3b.	PDZ domain containing 4.	0.545
ENSPFOP00000026365	PDZD4	ENSPFOP00000026365	ENSPFOP00000001510	Cyclin-dependent kinase-like 1 (CDC2-related kinase).	PDZ domain containing 4.	0.615
LOC103133606	ENSPFOP00000022682	ENSPFOP00000018668	ENSPFOP00000022682	Actinin, alpha 2b.	Actinin alpha 3b.	0.900
LOC103133606	PDZD4	ENSPFOP00000018668	ENSPFOP00000001510	Actinin, alpha 2b.	PDZ domain containing 4.	0.545
PDZD4	ACTN4	ENSPFOP00000001510	ENSPFOP00000017666	PDZ domain containing 4.	Actinin alpha 4.	0.545
PDZD4	ENSPFOP00000001899	ENSPFOP00000001510	ENSPFOP00000001899	PDZ domain containing 4.	MARVEL domain containing 1.	0.560
PDZD4	ENSPFOP00000022682	ENSPFOP00000001510	ENSPFOP00000022682	PDZ domain containing 4.	Actinin alpha 3b.	0.545
PDZD4	ENSPFOP00000026365	ENSPFOP00000001510	ENSPFOP00000026365	PDZ domain containing 4.	Cyclin-dependent kinase-like 1 (CDC2-related kinase).	0.615
PDZD4	LOC103133606	ENSPFOP00000001510	ENSPFOP00000018668	PDZ domain containing 4.	Actinin, alpha 2b.	0.545
PDZD4	apip	ENSPFOP00000001510	ENSPFOP00000019470	PDZ domain containing 4.	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	0.765
PDZD4	cep131	ENSPFOP00000001510	ENSPFOP00000018859	PDZ domain containing 4.	Centrosomal protein 131.	0.729
PDZD4	dcaf5	ENSPFOP00000001510	ENSPFOP00000017407	PDZ domain containing 4.	Actinin, alpha 1.	0.545
PDZD4	pipox	ENSPFOP00000001510	ENSPFOP00000007018	PDZ domain containing 4.	Pipecolic acid oxidase.	0.493
PDZD4	taf3	ENSPFOP00000001510	ENSPFOP00000013193	PDZ domain containing 4.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.503
apip	PDZD4	ENSPFOP00000019470	ENSPFOP00000001510	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	PDZ domain containing 4.	0.765
cep131	PDZD4	ENSPFOP00000018859	ENSPFOP00000001510	Centrosomal protein 131.	PDZ domain containing 4.	0.729