plac8 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plac8

Placenta associated 8, tandem duplicate 1. (104 aa)

Predicted Functional Partners:

RBPMS

0.742

LOC103143280

0.679

ENSPFOP00000007132

0.663

ENSPFOP00000013745

0.570

mysm1

0.536

ENSPFOP00000008121

0.525

LOC103145452

0.511

LOC103153412

0.511

tmem41b

0.500

med1

0.458

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000007132	plac8	ENSPFOP00000007132	ENSPFOP00000001512	Cytochrome P450, family 51; Belongs to the cytochrome P450 family.	Placenta associated 8, tandem duplicate 1.	0.663
ENSPFOP00000008121	plac8	ENSPFOP00000008121	ENSPFOP00000001512	SNF related kinase a; Belongs to the protein kinase superfamily.	Placenta associated 8, tandem duplicate 1.	0.525
ENSPFOP00000013745	plac8	ENSPFOP00000013745	ENSPFOP00000001512	Polymerase (RNA) III (DNA directed) polypeptide H.	Placenta associated 8, tandem duplicate 1.	0.570
LOC103143280	plac8	ENSPFOP00000013897	ENSPFOP00000001512	Uncharacterized protein.	Placenta associated 8, tandem duplicate 1.	0.679
LOC103145452	plac8	ENSPFOP00000011440	ENSPFOP00000001512	Galectin.	Placenta associated 8, tandem duplicate 1.	0.511
LOC103153412	plac8	ENSPFOP00000012998	ENSPFOP00000001512	Galectin.	Placenta associated 8, tandem duplicate 1.	0.511
RBPMS	plac8	ENSPFOP00000017239	ENSPFOP00000001512	RNA binding protein, mRNA processing factor.	Placenta associated 8, tandem duplicate 1.	0.742
med1	mysm1	ENSPFOP00000001635	ENSPFOP00000015240	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Myb-like, SWIRM and MPN domains 1.	0.457
med1	plac8	ENSPFOP00000001635	ENSPFOP00000001512	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Placenta associated 8, tandem duplicate 1.	0.458
mysm1	med1	ENSPFOP00000015240	ENSPFOP00000001635	Myb-like, SWIRM and MPN domains 1.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.457
mysm1	plac8	ENSPFOP00000015240	ENSPFOP00000001512	Myb-like, SWIRM and MPN domains 1.	Placenta associated 8, tandem duplicate 1.	0.536
plac8	ENSPFOP00000007132	ENSPFOP00000001512	ENSPFOP00000007132	Placenta associated 8, tandem duplicate 1.	Cytochrome P450, family 51; Belongs to the cytochrome P450 family.	0.663
plac8	ENSPFOP00000008121	ENSPFOP00000001512	ENSPFOP00000008121	Placenta associated 8, tandem duplicate 1.	SNF related kinase a; Belongs to the protein kinase superfamily.	0.525
plac8	ENSPFOP00000013745	ENSPFOP00000001512	ENSPFOP00000013745	Placenta associated 8, tandem duplicate 1.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.570
plac8	LOC103143280	ENSPFOP00000001512	ENSPFOP00000013897	Placenta associated 8, tandem duplicate 1.	Uncharacterized protein.	0.679
plac8	LOC103145452	ENSPFOP00000001512	ENSPFOP00000011440	Placenta associated 8, tandem duplicate 1.	Galectin.	0.511
plac8	LOC103153412	ENSPFOP00000001512	ENSPFOP00000012998	Placenta associated 8, tandem duplicate 1.	Galectin.	0.511
plac8	RBPMS	ENSPFOP00000001512	ENSPFOP00000017239	Placenta associated 8, tandem duplicate 1.	RNA binding protein, mRNA processing factor.	0.742
plac8	med1	ENSPFOP00000001512	ENSPFOP00000001635	Placenta associated 8, tandem duplicate 1.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.458
plac8	mysm1	ENSPFOP00000001512	ENSPFOP00000015240	Placenta associated 8, tandem duplicate 1.	Myb-like, SWIRM and MPN domains 1.	0.536