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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103153803PL48 domain-containing protein. (619 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.864
gle1
GLE1 RNA export mediator.
    
 0.685
ENSPFOP00000027759
Fraser extracellular matrix complex subunit 1.
    
 0.649
ENSPFOP00000001347
Fras1 related extracellular matrix 1a.
    
 0.641
ENSPFOP00000027842
C-type lectin domain-containing protein.
    
 0.641
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
  0.634
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1.
   
 
 0.615
rps15a
Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.615
ranbp2
RAN binding protein 2.
   
 
  0.612
ENSPFOP00000002502
Ribosomal protein S28.
   
   0.605
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.