Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arhgef39Rho guanine nucleotide exchange factor (GEF) 39. (414 aa)    
Predicted Functional Partners:
ENSPFOP00000006747
Si:ch211-15b10.6.
    
   0.765
ENSPFOP00000020886
Si:ch211-15b10.6.
    
   0.765
ENSPFOP00000013282
Rho guanine nucleotide exchange factor (GEF) 37.
    
 0.638
ENSPFOP00000006120
Cdc42 guanine nucleotide exchange factor (GEF) 9b.
    
 0.617
LOC103139728
Spermatogenesis associated 13.
    
 0.617
ARHGEF4
Rho guanine nucleotide exchange factor 4.
    
 0.617
ENSPFOP00000027432
Uncharacterized protein.
    
 0.617
ENSPFOP00000030810
Actin binding LIM protein family, member 2.
      
 0.593
rnls
Renalase, FAD-dependent amine oxidase.
      
 0.585
LOC103156121
Syndecan binding protein (syntenin) 2.
      
 0.584
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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