STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103152459Pellino E3 ubiquitin protein ligase 1b. (426 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.910
LOC103134441
Interleukin-1 receptor-associated kinase 4.
    
 0.850
ENSPFOP00000007229
Interleukin-1 receptor-associated kinase 4.
    
 0.850
ENSPFOP00000022883
Uncharacterized protein.
    
 0.801
irak1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.801
LOC103139106
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.753
UBE2N
Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.742
LOC103129309
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.742
ENSPFOP00000015630
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.693
uxs1
UDP-glucuronate decarboxylase 1.
    
   0.681
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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