Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GRAMD2BGRAM domain containing 2B. (399 aa)    
Predicted Functional Partners:
gramd1c
GRAM domain containing 1c.
    
 
 0.902
gramd1b
GRAM domain containing 1Bb.
    
 
 0.876
ENSPFOP00000015043
Uncharacterized protein.
   
   0.762
ENSPFOP00000005021
GRAM domain containing 1A.
    
 
 0.747
ENSPFOP00000005156
BUD22 domain-containing protein.
      
 0.689
ENSPFOP00000000489
Synuclein, alpha interacting protein.
    
 
 0.683
casc4
Cancer susceptibility candidate 4.
    
   0.682
gramd2a
GRAM domain containing 2A.
    
 
 0.680
mtap
S-methyl-5'-thioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
      
 0.646
myrf
Myelin regulatory factor.
    
   0.579
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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