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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubxn2aUBX domain protein 2A. (235 aa)    
Predicted Functional Partners:
ENSPFOP00000006930
UBX domain protein 6.
    
 0.998
LOC103154164
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.996
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.996
nsfl1c
NSFL1 (p97) cofactor (p47).
  
 
 
0.990
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.990
ENSPFOP00000020403
UBX domain protein 10.
    
 
 0.990
ubxn1
UBX domain protein 1.
   
 0.984
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
    
 
 0.974
ENSPFOP00000009388
UBX domain protein 7.
   
 
 0.971
ENSPFOP00000019765
Si:ch73-147o17.1.
     
 0.970
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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