arl2 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

arl2

ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)

Predicted Functional Partners:

ENSPFOP00000025666

0.999

ENSPFOP00000012880

0.997

tbcd

0.992

tbcb

0.965

unc119

0.963

LOC103139178

0.963

ENSPFOP00000010065

0.961

ENSPFOP00000020571

0.949

rp2

0.901

ENSPFOP00000008234

0.711

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000008234	ENSPFOP00000012880	ENSPFOP00000008234	ENSPFOP00000012880	GMP_PDE_delta domain-containing protein.	Phosphodiesterase 6D, cGMP-specific, rod, delta.	0.589
ENSPFOP00000008234	ENSPFOP00000020571	ENSPFOP00000008234	ENSPFOP00000020571	GMP_PDE_delta domain-containing protein.	Tubulin folding cofactor C.	0.553
ENSPFOP00000008234	arl2	ENSPFOP00000008234	ENSPFOP00000001564	GMP_PDE_delta domain-containing protein.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.711
ENSPFOP00000008234	rp2	ENSPFOP00000008234	ENSPFOP00000015654	GMP_PDE_delta domain-containing protein.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.780
ENSPFOP00000010065	ENSPFOP00000020571	ENSPFOP00000010065	ENSPFOP00000020571	Tubulin folding cofactor E.	Tubulin folding cofactor C.	0.955
ENSPFOP00000010065	arl2	ENSPFOP00000010065	ENSPFOP00000001564	Tubulin folding cofactor E.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.961
ENSPFOP00000010065	rp2	ENSPFOP00000010065	ENSPFOP00000015654	Tubulin folding cofactor E.	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.	0.895
ENSPFOP00000010065	tbcb	ENSPFOP00000010065	ENSPFOP00000009738	Tubulin folding cofactor E.	Tubulin folding cofactor B.	0.973
ENSPFOP00000010065	tbcd	ENSPFOP00000010065	ENSPFOP00000004391	Tubulin folding cofactor E.	Tubulin folding cofactor D.	0.984
ENSPFOP00000012880	ENSPFOP00000008234	ENSPFOP00000012880	ENSPFOP00000008234	Phosphodiesterase 6D, cGMP-specific, rod, delta.	GMP_PDE_delta domain-containing protein.	0.589
ENSPFOP00000012880	LOC103139178	ENSPFOP00000012880	ENSPFOP00000009320	Phosphodiesterase 6D, cGMP-specific, rod, delta.	GMP_PDE_delta domain-containing protein.	0.736
ENSPFOP00000012880	arl2	ENSPFOP00000012880	ENSPFOP00000001564	Phosphodiesterase 6D, cGMP-specific, rod, delta.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.997
ENSPFOP00000012880	unc119	ENSPFOP00000012880	ENSPFOP00000006479	Phosphodiesterase 6D, cGMP-specific, rod, delta.	Unc-119 lipid binding chaperone.	0.736
ENSPFOP00000020571	ENSPFOP00000008234	ENSPFOP00000020571	ENSPFOP00000008234	Tubulin folding cofactor C.	GMP_PDE_delta domain-containing protein.	0.553
ENSPFOP00000020571	ENSPFOP00000010065	ENSPFOP00000020571	ENSPFOP00000010065	Tubulin folding cofactor C.	Tubulin folding cofactor E.	0.955
ENSPFOP00000020571	LOC103139178	ENSPFOP00000020571	ENSPFOP00000009320	Tubulin folding cofactor C.	GMP_PDE_delta domain-containing protein.	0.519
ENSPFOP00000020571	arl2	ENSPFOP00000020571	ENSPFOP00000001564	Tubulin folding cofactor C.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.949
ENSPFOP00000020571	tbcb	ENSPFOP00000020571	ENSPFOP00000009738	Tubulin folding cofactor C.	Tubulin folding cofactor B.	0.731
ENSPFOP00000020571	tbcd	ENSPFOP00000020571	ENSPFOP00000004391	Tubulin folding cofactor C.	Tubulin folding cofactor D.	0.993
ENSPFOP00000020571	unc119	ENSPFOP00000020571	ENSPFOP00000006479	Tubulin folding cofactor C.	Unc-119 lipid binding chaperone.	0.519