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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh8AlkB homolog 8, tRNA methyltransferase. (683 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 
 0.806
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.784
alkbh7
AlkB homolog 7.
      
 0.565
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.564
ENSPFOP00000003931
Afadin, adherens junction formation factor a.
    
  0.555
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.555
ENSPFOP00000029045
PDZ domain-containing protein.
    
  0.555
ENSPFOP00000020059
Adenosine deaminase tRNA specific 3.
     
 0.552
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
   
  
 0.548
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.516
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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