Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EMP1Uncharacterized protein. (160 aa)    
Predicted Functional Partners:
emp2
Epithelial membrane protein 2.
  
  
 
0.901
ENSPFOP00000001450
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itgb3
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itgb1
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
LOC103142160
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itgb5
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
itgb4
Integrin beta.
     
  0.900
ENSPFOP00000029475
Integrin beta; Belongs to the integrin beta chain family.
     
  0.900
LOC103145646
Si:ch211-137i24.10.
  
     0.401
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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