Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl34Mitochondrial ribosomal protein L34. (126 aa)    
Predicted Functional Partners:
mrps30
Mitochondrial ribosomal protein S30.
    
 
 0.986
mrpl10
Mitochondrial ribosomal protein L10.
   
 
 0.984
ENSPFOP00000006317
Mitochondrial ribosomal protein S14.
   
 
 0.982
mrpl13
Mitochondrial ribosomal protein L13.
   
 
 0.982
ENSPFOP00000020496
Mitochondrial ribosomal protein L41.
   
 
 0.979
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.978
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.976
mrpl30
Mitochondrial ribosomal protein L30.
   
 
 0.976
mrpl43
Mitochondrial ribosomal protein L43.
   
 
 0.976
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.974
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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