Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cmblCarboxymethylenebutenolidase homolog (Pseudomonas). (245 aa)    
Predicted Functional Partners:
ENSPFOP00000010208
Alcohol dehydrogenase iron containing 1.
  
 
 0.859
ENSPFOP00000007796
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
   0.845
trappc13
Trafficking protein particle complex 13.
    
   0.845
trappc12
Trafficking protein particle complex 12.
    
   0.842
trappc11
Trafficking protein particle complex 11.
    
   0.842
josd1
Josephin domain containing 1.
      
 0.801
ENSPFOP00000015912
WD repeat domain 90.
    
   0.774
LOC103139343
Trafficking protein particle complex 2-like.
    
   0.771
LOC103139343-2
Trafficking protein particle complex subunit 2-like protein.
    
   0.771
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
   0.770
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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