Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR25WD repeat domain 25. (471 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 0.948
ENSPFOP00000001559
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.946
ENSPFOP00000004074
SYF2 pre-mRNA-splicing factor.
    
 0.944
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast).
   
 0.944
cwc25
CWC25 spliceosome associated protein homolog.
    
 0.942
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.940
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.937
xab2
XPA binding protein 2.
   
 0.933
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.932
snw1
SNW domain containing 1.
   
 0.925
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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