Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ENSPFOP00000001616LIM zinc-binding domain-containing protein. (753 aa)    
Predicted Functional Partners:
LOC103142442
Si:dkey-30c15.10.
    
   0.719
ENSPFOP00000007941
Anillin, actin binding protein.
    
   0.719
alg6
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.661
vps26a
VPS26, retromer complex component A.
      
 0.644
tmlhe
Trimethyllysine hydroxylase, epsilon.
    
 
 0.566
ccnf
Cyclin F; Belongs to the cyclin family.
    
   0.529
ddx51
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.
      
 0.467
ENSPFOP00000006987
Ankyrin repeat domain 54.
    
 
 0.448
LOC103135175
Serine/threonine kinase 3 (STE20 homolog, yeast).
    
  0.428
LOC103150146
Uncharacterized protein.
    
  0.428
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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