Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155220Cathepsin D; Belongs to the peptidase A1 family. (396 aa)    
Predicted Functional Partners:
bcl2
BCL2 apoptosis regulator b.
     
 0.905
LOC103147381
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
  
  
 
0.901
ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
 0.860
LOC103136480
Cathepsin Ba; Belongs to the peptidase C1 family.
   
 0.830
agt
Angiotensinogen; Belongs to the serpin family.
    
 0.816
ENSPFOP00000005222
Cathepsin Bb; Belongs to the peptidase C1 family.
   
 0.809
LOC103151583
Cathepsin S, ortholog 1; Belongs to the peptidase C1 family.
   
 0.794
ctsc
Cathepsin C; Belongs to the peptidase C1 family.
   
 0.770
atp6ap2
ATPase H+ transporting accessory protein 2.
   
 0.761
LOC103156711
Cathepsin K; Belongs to the peptidase C1 family.
   
 0.727
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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