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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155391C1q domain-containing protein. (260 aa)    
Predicted Functional Partners:
ENSPFOP00000028219
Uncharacterized protein.
    
  0.674
ENSPFOP00000003242
TROVE domain-containing protein.
    
  0.543
ENSPFOP00000028292
WD_REPEATS_REGION domain-containing protein.
    
  0.543
lig1
DNA ligase.
    
 0.531
ENSPFOP00000016945
Regulatory associated protein of MTOR, complex 1.
    
 0.520
ENSPFOP00000007155
DET1 partner of COP1 E3 ubiquitin ligase.
    
  0.496
mlst8
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
  0.496
ENSPFOP00000001450
Integrin beta; Belongs to the integrin beta chain family.
    
  0.495
ENSPFOP00000015421
Collagen, type VI, alpha 1.
   
  0.477
ENSPFOP00000013980
CD44 molecule (Indian blood group) b.
    
  0.476
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.