ENSPFOP00000001645 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000001645

Uncharacterized protein. (955 aa)

Predicted Functional Partners:

ENSPFOP00000029563

0.943

cfap69

0.726

ENSPFOP00000001950

0.709

lrguk

0.708

apex1

0.700

ENSPFOP00000016806

0.680

ENSPFOP00000031126

0.602

tmtc3

0.593

lrrc58

0.580

gabrd

0.569

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001645	ENSPFOP00000001950	ENSPFOP00000001645	ENSPFOP00000001950	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.709
ENSPFOP00000001645	ENSPFOP00000016806	ENSPFOP00000001645	ENSPFOP00000016806	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSPFOP00000001645	ENSPFOP00000029563	ENSPFOP00000001645	ENSPFOP00000029563	Uncharacterized protein.	Uncharacterized protein.	0.943
ENSPFOP00000001645	ENSPFOP00000031126	ENSPFOP00000001645	ENSPFOP00000031126	Uncharacterized protein.	Uncharacterized protein.	0.602
ENSPFOP00000001645	apex1	ENSPFOP00000001645	ENSPFOP00000004046	Uncharacterized protein.	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.	0.700
ENSPFOP00000001645	cfap69	ENSPFOP00000001645	ENSPFOP00000030854	Uncharacterized protein.	Uncharacterized protein.	0.726
ENSPFOP00000001645	gabrd	ENSPFOP00000001645	ENSPFOP00000001721	Uncharacterized protein.	Gamma-aminobutyric acid (GABA) A receptor, delta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.569
ENSPFOP00000001645	lrguk	ENSPFOP00000001645	ENSPFOP00000029675	Uncharacterized protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.708
ENSPFOP00000001645	lrrc58	ENSPFOP00000001645	ENSPFOP00000026214	Uncharacterized protein.	Leucine rich repeat containing 58b.	0.580
ENSPFOP00000001645	tmtc3	ENSPFOP00000001645	ENSPFOP00000015069	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.593
ENSPFOP00000001950	ENSPFOP00000001645	ENSPFOP00000001950	ENSPFOP00000001645	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.709
ENSPFOP00000001950	ENSPFOP00000016806	ENSPFOP00000001950	ENSPFOP00000016806	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.689
ENSPFOP00000001950	ENSPFOP00000029563	ENSPFOP00000001950	ENSPFOP00000029563	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.709
ENSPFOP00000001950	ENSPFOP00000031126	ENSPFOP00000001950	ENSPFOP00000031126	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.511
ENSPFOP00000001950	lrguk	ENSPFOP00000001950	ENSPFOP00000029675	Calponin-homology (CH) domain-containing protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.809
ENSPFOP00000016806	ENSPFOP00000001645	ENSPFOP00000016806	ENSPFOP00000001645	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSPFOP00000016806	ENSPFOP00000001950	ENSPFOP00000016806	ENSPFOP00000001950	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.689
ENSPFOP00000016806	ENSPFOP00000029563	ENSPFOP00000016806	ENSPFOP00000029563	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSPFOP00000016806	cfap69	ENSPFOP00000016806	ENSPFOP00000030854	Uncharacterized protein.	Uncharacterized protein.	0.476
ENSPFOP00000016806	lrguk	ENSPFOP00000016806	ENSPFOP00000029675	Uncharacterized protein.	Leucine-rich repeats and guanylate kinase domain containing.	0.573