Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001651Lipoxygenase homology domains 1a. (2355 aa)    
Predicted Functional Partners:
ENSPFOP00000007414
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.641
ENSPFOP00000024546
Usher syndrome 2A (autosomal recessive, mild).
    
 
 0.620
ICK
Intestinal cell kinase.
      
 0.577
slc26a5
Solute carrier family 26 member 5.
   
 
 0.575
LOC103155772
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.527
ush1c
Usher syndrome 1C.
    
 
 0.526
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.522
agtpbp1
ATP/GTP binding protein 1.
     
 0.515
ENSPFOP00000006756
Ring finger protein 165b.
    
 
 0.501
rnf165
Ring finger protein 165a.
    
 
 0.501
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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