Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103151004COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)    
Predicted Functional Partners:
cops5
COP9 signalosome subunit 5.
   
 0.999
LOC103131621
COP9 signalosome subunit 8.
   
 0.999
cops2
COP9 signalosome subunit 2.
   
 0.999
cops7a
COP9 constitutive photomorphogenic homolog subunit 7A.
   
 0.999
gps1
G protein pathway suppressor 1.
   
 0.999
cops3
COP9 signalosome subunit 3.
   
 0.999
COPS6
COP9 signalosome subunit 6.
   
 0.996
COPS6-2
COP9 signalosome subunit 6.
   
 0.996
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.994
ENSPFOP00000003124
Damage-specific DNA binding protein 1.
   
 0.993
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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