Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001679Uncharacterized protein. (467 aa)    
Predicted Functional Partners:
ENSPFOP00000002114
Helicase C-terminal domain-containing protein.
    
 0.650
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.632
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.598
pold1
DNA polymerase.
    
 0.531
ENSPFOP00000009388
UBX domain protein 7.
     
 0.522
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.518
ENSPFOP00000001647
Uncharacterized protein.
    
 0.505
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.505
ENSPFOP00000015340
Uncharacterized protein.
    
 0.503
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.501
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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