Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otx2Orthodenticle homeobox 2b. (290 aa)    
Predicted Functional Partners:
ENSPFOP00000004168
Gastrulation brain homeobox 2.
    
 0.729
LOC103141779
Zinc finger protein 366.
   
 
 0.709
LOC103152463
Orthodenticle homeobox 1.
   
  
 0.705
LOC103150761
Orthodenticle homeobox 2a.
   
  
 0.705
foxa2
Forkhead box A2.
   
 
 0.701
ENSPFOP00000009031
Fork-head domain-containing protein.
   
 
 0.695
LOC103147705
POU domain protein.
    
 0.645
fgf5
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.624
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.618
ENSPFOP00000001861
Homeobox B4a.
     
 0.615
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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