pafah1b3 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pafah1b3

Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit. (223 aa)

Predicted Functional Partners:

LOC103139247

0.994

PAFAH1B1

0.994

LOC103133987

0.955

lpcat2

0.920

pla2g7

0.917

LOC103146032

0.909

LPCAT1

0.909

lpcat4

0.900

chpt1

0.900

cept1

0.900

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103133987	LOC103139247	ENSPFOP00000019637	ENSPFOP00000010364	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.994
LOC103133987	LOC103146032	ENSPFOP00000019637	ENSPFOP00000005083	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lysophosphatidylcholine acyltransferase 1.	0.909
LOC103133987	LPCAT1	ENSPFOP00000019637	ENSPFOP00000016632	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lysophosphatidylcholine acyltransferase 1.	0.909
LOC103133987	PAFAH1B1	ENSPFOP00000019637	ENSPFOP00000015128	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.994
LOC103133987	cept1	ENSPFOP00000019637	ENSPFOP00000017839	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Choline/ethanolamine phosphotransferase 1b; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.900
LOC103133987	chpt1	ENSPFOP00000019637	ENSPFOP00000010747	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.900
LOC103133987	lpcat2	ENSPFOP00000019637	ENSPFOP00000016188	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lysophosphatidylcholine acyltransferase 2.	0.920
LOC103133987	lpcat4	ENSPFOP00000019637	ENSPFOP00000002596	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Lysophosphatidylcholine acyltransferase 4.	0.900
LOC103133987	pafah1b3	ENSPFOP00000019637	ENSPFOP00000001706	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit.	0.955
LOC103133987	pla2g7	ENSPFOP00000019637	ENSPFOP00000012470	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	Platelet-activating factor acetylhydrolase.	0.917
LOC103139247	LOC103133987	ENSPFOP00000010364	ENSPFOP00000019637	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Platelet-activating factor acetylhydrolase 1b, catalytic subunit 2.	0.994
LOC103139247	LOC103146032	ENSPFOP00000010364	ENSPFOP00000005083	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lysophosphatidylcholine acyltransferase 1.	0.900
LOC103139247	LPCAT1	ENSPFOP00000010364	ENSPFOP00000016632	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lysophosphatidylcholine acyltransferase 1.	0.900
LOC103139247	PAFAH1B1	ENSPFOP00000010364	ENSPFOP00000015128	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.900
LOC103139247	cept1	ENSPFOP00000010364	ENSPFOP00000017839	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Choline/ethanolamine phosphotransferase 1b; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.900
LOC103139247	chpt1	ENSPFOP00000010364	ENSPFOP00000010747	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.900
LOC103139247	lpcat2	ENSPFOP00000010364	ENSPFOP00000016188	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lysophosphatidylcholine acyltransferase 2.	0.900
LOC103139247	lpcat4	ENSPFOP00000010364	ENSPFOP00000002596	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Lysophosphatidylcholine acyltransferase 4.	0.900
LOC103139247	pafah1b3	ENSPFOP00000010364	ENSPFOP00000001706	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit.	0.994
LOC103139247	pla2g7	ENSPFOP00000010364	ENSPFOP00000012470	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	Platelet-activating factor acetylhydrolase.	0.944