Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ENSPFOP00000001709Tetraspanin. (178 aa)    
Predicted Functional Partners:
ENSPFOP00000013557
DAN domain family, member 5.
      
 0.727
tbx4
T-box transcription factor 4.
      
 0.684
GOLM1
Golgi membrane protein 1.
      
 0.681
LOC103155248
Uncharacterized protein.
   
 
 0.669
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.601
ENSPFOP00000006994
Zgc:171592; Belongs to the peptidase S1 family.
     
 0.594
ACTC1
Zgc:86709.
     
 0.587
ENSPFOP00000010276
Elastase 2; Belongs to the peptidase S1 family.
     
 0.584
mep1b
Meprin A subunit.
      
 0.581
ENSPFOP00000015970
Metalloendopeptidase.
      
 0.581
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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