Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (245 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.929
rnf113a
Ring finger protein 113A.
   
 
 0.883
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.879
sf3b2
Splicing factor 3b, subunit 2.
    
   0.878
prpf8
Pre-mRNA processing factor 8.
    
   0.878
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.878
sf3b3
Splicing factor 3b, subunit 3.
    
   0.878
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.853
rbm48
RNA binding motif protein 48.
    
 
 0.827
gpkow
G patch domain and KOW motifs.
   
   0.809
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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