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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (245 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.883
sf3b3
Splicing factor 3b, subunit 3.
    
   0.872
sf3b1
Splicing factor 3b, subunit 1.
    
   0.864
rnf113a
Ring finger protein 113A.
   
   0.849
sf3b2
Splicing factor 3b, subunit 2.
    
   0.845
prpf8
Pre-mRNA processing factor 8.
    
   0.845
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.845
sf3b6
Splicing factor 3b, subunit 6.
    
   0.838
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.767
rbm48
RNA binding motif protein 48.
    
 
 0.755
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.