hnrnpa1 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hnrnpa1

Uncharacterized protein. (338 aa)

Predicted Functional Partners:

hnrnpk

0.979

hnrnpm

0.977

ENSPFOP00000013648

0.973

ENSPFOP00000001541

0.957

rbmx

0.957

LOC103148591

0.956

hnrnpu

0.945

hnrnpa3

0.929

ENSPFOP00000017918

0.925

srsf2

0.890

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001541	ENSPFOP00000013648	ENSPFOP00000001541	ENSPFOP00000013648	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.972
ENSPFOP00000001541	ENSPFOP00000017918	ENSPFOP00000001541	ENSPFOP00000017918	RRM domain-containing protein.	Uncharacterized protein.	0.954
ENSPFOP00000001541	LOC103148591	ENSPFOP00000001541	ENSPFOP00000002560	RRM domain-containing protein.	RRM domain-containing protein.	0.898
ENSPFOP00000001541	hnrnpa1	ENSPFOP00000001541	ENSPFOP00000001746	RRM domain-containing protein.	Uncharacterized protein.	0.957
ENSPFOP00000001541	hnrnpa3	ENSPFOP00000001541	ENSPFOP00000014094	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein A3.	0.957
ENSPFOP00000001541	hnrnpk	ENSPFOP00000001541	ENSPFOP00000018941	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.978
ENSPFOP00000001541	hnrnpm	ENSPFOP00000001541	ENSPFOP00000013730	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.985
ENSPFOP00000001541	hnrnpu	ENSPFOP00000001541	ENSPFOP00000002868	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein Ub.	0.946
ENSPFOP00000001541	rbmx	ENSPFOP00000001541	ENSPFOP00000013238	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.958
ENSPFOP00000001541	srsf2	ENSPFOP00000001541	ENSPFOP00000020482	RRM domain-containing protein.	Serine and arginine rich splicing factor 2a.	0.796
ENSPFOP00000013648	ENSPFOP00000001541	ENSPFOP00000013648	ENSPFOP00000001541	Heterogeneous nuclear ribonucleoprotein K, like.	RRM domain-containing protein.	0.972
ENSPFOP00000013648	ENSPFOP00000017918	ENSPFOP00000013648	ENSPFOP00000017918	Heterogeneous nuclear ribonucleoprotein K, like.	Uncharacterized protein.	0.932
ENSPFOP00000013648	LOC103148591	ENSPFOP00000013648	ENSPFOP00000002560	Heterogeneous nuclear ribonucleoprotein K, like.	RRM domain-containing protein.	0.971
ENSPFOP00000013648	hnrnpa1	ENSPFOP00000013648	ENSPFOP00000001746	Heterogeneous nuclear ribonucleoprotein K, like.	Uncharacterized protein.	0.973
ENSPFOP00000013648	hnrnpa3	ENSPFOP00000013648	ENSPFOP00000014094	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein A3.	0.973
ENSPFOP00000013648	hnrnpk	ENSPFOP00000013648	ENSPFOP00000018941	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein K.	0.923
ENSPFOP00000013648	hnrnpm	ENSPFOP00000013648	ENSPFOP00000013730	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein M.	0.988
ENSPFOP00000013648	hnrnpu	ENSPFOP00000013648	ENSPFOP00000002868	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein Ub.	0.961
ENSPFOP00000013648	rbmx	ENSPFOP00000013648	ENSPFOP00000013238	Heterogeneous nuclear ribonucleoprotein K, like.	RNA binding motif protein X-linked.	0.969
ENSPFOP00000013648	srsf2	ENSPFOP00000013648	ENSPFOP00000020482	Heterogeneous nuclear ribonucleoprotein K, like.	Serine and arginine rich splicing factor 2a.	0.792