ENSPFOP00000001765 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000001765

Cartilage acidic protein 1b. (630 aa)

Predicted Functional Partners:

mapre2

0.749

LOC103148354

0.749

ENSPFOP00000024522

0.749

mapre1

0.573

ENSPFOP00000008760

0.473

LOC103139174

0.459

LOC103154580

0.438

ENSPFOP00000014959

0.435

mmab

0.409

agtpbp1

0.409

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001765	ENSPFOP00000008760	ENSPFOP00000001765	ENSPFOP00000008760	Cartilage acidic protein 1b.	Ig-like domain-containing protein.	0.473
ENSPFOP00000001765	ENSPFOP00000014959	ENSPFOP00000001765	ENSPFOP00000014959	Cartilage acidic protein 1b.	Anion exchange protein.	0.435
ENSPFOP00000001765	ENSPFOP00000024522	ENSPFOP00000001765	ENSPFOP00000024522	Cartilage acidic protein 1b.	Microtubule-associated protein, RP/EB family, member 3b.	0.749
ENSPFOP00000001765	LOC103139174	ENSPFOP00000001765	ENSPFOP00000006326	Cartilage acidic protein 1b.	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.459
ENSPFOP00000001765	LOC103148354	ENSPFOP00000001765	ENSPFOP00000023648	Cartilage acidic protein 1b.	Microtubule-associated protein, RP/EB family, member 3a.	0.749
ENSPFOP00000001765	LOC103154580	ENSPFOP00000001765	ENSPFOP00000024353	Cartilage acidic protein 1b.	Uncharacterized protein.	0.438
ENSPFOP00000001765	agtpbp1	ENSPFOP00000001765	ENSPFOP00000018866	Cartilage acidic protein 1b.	ATP/GTP binding protein 1.	0.409
ENSPFOP00000001765	mapre1	ENSPFOP00000001765	ENSPFOP00000010927	Cartilage acidic protein 1b.	Microtubule-associated protein, RP/EB family, member 1b.	0.573
ENSPFOP00000001765	mapre2	ENSPFOP00000001765	ENSPFOP00000014562	Cartilage acidic protein 1b.	Microtubule-associated protein, RP/EB family, member 2.	0.749
ENSPFOP00000001765	mmab	ENSPFOP00000001765	ENSPFOP00000012992	Cartilage acidic protein 1b.	Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.	0.409
ENSPFOP00000008760	ENSPFOP00000001765	ENSPFOP00000008760	ENSPFOP00000001765	Ig-like domain-containing protein.	Cartilage acidic protein 1b.	0.473
ENSPFOP00000014959	ENSPFOP00000001765	ENSPFOP00000014959	ENSPFOP00000001765	Anion exchange protein.	Cartilage acidic protein 1b.	0.435
ENSPFOP00000014959	LOC103154580	ENSPFOP00000014959	ENSPFOP00000024353	Anion exchange protein.	Uncharacterized protein.	0.438
ENSPFOP00000024522	ENSPFOP00000001765	ENSPFOP00000024522	ENSPFOP00000001765	Microtubule-associated protein, RP/EB family, member 3b.	Cartilage acidic protein 1b.	0.749
ENSPFOP00000024522	mapre1	ENSPFOP00000024522	ENSPFOP00000010927	Microtubule-associated protein, RP/EB family, member 3b.	Microtubule-associated protein, RP/EB family, member 1b.	0.810
LOC103139174	ENSPFOP00000001765	ENSPFOP00000006326	ENSPFOP00000001765	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Cartilage acidic protein 1b.	0.459
LOC103148354	ENSPFOP00000001765	ENSPFOP00000023648	ENSPFOP00000001765	Microtubule-associated protein, RP/EB family, member 3a.	Cartilage acidic protein 1b.	0.749
LOC103148354	mapre1	ENSPFOP00000023648	ENSPFOP00000010927	Microtubule-associated protein, RP/EB family, member 3a.	Microtubule-associated protein, RP/EB family, member 1b.	0.810
LOC103154580	ENSPFOP00000001765	ENSPFOP00000024353	ENSPFOP00000001765	Uncharacterized protein.	Cartilage acidic protein 1b.	0.438
LOC103154580	ENSPFOP00000014959	ENSPFOP00000024353	ENSPFOP00000014959	Uncharacterized protein.	Anion exchange protein.	0.438