Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103152274Stathmin; Belongs to the stathmin family. (180 aa)    
Predicted Functional Partners:
ENSPFOP00000003211
Stathmin; Belongs to the stathmin family.
   
   0.993
vps26c
VPS26 endosomal protein sorting factor C.
    
 
 0.895
commd9
COMM domain containing 9.
    
  0.861
commd6
COMM domain containing 6.
    
  0.852
ENSPFOP00000011507
COMM domain containing 7.
    
  0.831
commd2
COMM domain containing 2.
    
  0.831
COMMD10
COMM domain containing 10.
    
  0.828
LOC103141247
COMM domain containing 4.
    
  0.824
vps35l
VPS35 endosomal protein sorting factor like.
    
   0.822
dennd10
DENN domain containing 10.
  
  0.805
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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