Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103149824Transcription factor 3b. (634 aa)    
Predicted Functional Partners:
LOC103148292
T-cell acute lymphocytic leukemia 1.
    
 0.906
ENSPFOP00000017344
Myogenin.
    
 0.858
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.847
ENSPFOP00000018159
Achaete-scute family bHLH transcription factor 1a.
   
 0.829
LOC103151621
Achaete-scute family bHLH transcription factor 1b.
   
 0.829
LOC103144227
Inhibitor of DNA binding 3.
    
 
 0.813
ENSPFOP00000020767
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.812
myf6
Myogenic factor 6.
    
 0.803
LOC103142653
Myogenic factor.
    
 0.801
LOC103149376
Myogenic factor.
    
 0.801
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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