Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lin54Lin-54 DREAM MuvB core complex component. (799 aa)    
Predicted Functional Partners:
lin9
Lin-9 DREAM MuvB core complex component.
   
 0.998
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.998
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.998
LOC103129685
WD_REPEATS_REGION domain-containing protein.
   
 0.995
ENSPFOP00000008113
Retinoblastoma binding protein 4.
   
 0.995
mybl2
V-myb avian myeloblastosis viral oncogene homolog-like 2b.
    
 0.989
tmem147
Transmembrane protein 147.
   
 0.950
foxm1
Forkhead box M1.
    
 0.943
tfdp1
Transcription factor.
   
 0.940
ENSPFOP00000006330
E2F transcription factor 5.
    
 0.933
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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