Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103146386TAP binding protein (tapasin), tandem duplicate 2. (440 aa)    
Predicted Functional Partners:
ENSPFOP00000003021
Transporter associated with antigen processing, subunit type a.
   
 0.991
LOC103152415
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.990
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.985
ENSPFOP00000002156
Calreticulin.
    
 0.984
LOC103138474
Calreticulin.
    
 0.984
pdia3
Protein disulfide-isomerase.
    
 0.980
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
    
 0.946
abcb9
ATP-binding cassette, sub-family B (MDR/TAP), member 9.
   
 0.931
tapbpl
TAP binding protein like.
  
 
0.926
LOC103129860
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.904
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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