Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSPFOP00000001833RAB GTPase activating protein 1-like 2. (298 aa)    
Predicted Functional Partners:
LOC103130959
Uncharacterized protein.
    
 
 0.673
ENSPFOP00000024691
PID domain-containing protein.
 
      0.649
ENSPFOP00000019429
PX domain containing 1b.
    
   0.599
ENSPFOP00000000488
Uncharacterized protein.
    
 0.588
rab1a
Uncharacterized protein.
    
 0.588
ENSPFOP00000012635
ZRAB1B, member RAS oncogene family a.
    
 0.588
ENSPFOP00000013841
Zgc:171927.
    
 0.588
LOC103151367
RAB6B, member RAS oncogene family a.
    
 0.549
RAB6B
RAB6B, member RAS oncogene family.
    
 0.549
RAB41
RAB41, member RAS oncogene family.
    
 0.549
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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