Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107832861Ig-like domain-containing protein; Belongs to the MHC class I family. (367 aa)    
Predicted Functional Partners:
ENSPFOP00000027913
Ig-like domain-containing protein.
     
  0.920
LOC103129860
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.919
LOC103135288
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.919
LOC103139595
Ig-like domain-containing protein.
    
 0.918
pdia3
Protein disulfide-isomerase.
    
  0.857
ENSPFOP00000002156
Calreticulin.
    
 0.854
LOC103138474
Calreticulin.
    
 0.854
LOC103147914
Protein disulfide-isomerase.
    
  0.806
LOC103142380
RPA_C domain-containing protein.
   
 0.779
rpa2
Replication protein A2.
   
 0.779
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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