ell protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ell

Elongation factor RNA polymerase II. (645 aa)

Predicted Functional Partners:

aff4

0.994

eaf1

0.965

eaf2

0.952

ice2

0.944

cdk9

0.922

ENSPFOP00000004460

0.917

mllt3

0.813

mllt1

0.813

ENSPFOP00000030851

0.813

ccnt2

0.784

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000004460	ENSPFOP00000030851	ENSPFOP00000004460	ENSPFOP00000030851	Uncharacterized protein.	Uncharacterized protein.	0.954
ENSPFOP00000004460	aff4	ENSPFOP00000004460	ENSPFOP00000007272	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.984
ENSPFOP00000004460	ccnt2	ENSPFOP00000004460	ENSPFOP00000000178	Uncharacterized protein.	Cyclin T2; Belongs to the cyclin family.	0.942
ENSPFOP00000004460	cdk9	ENSPFOP00000004460	ENSPFOP00000005331	Uncharacterized protein.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.996
ENSPFOP00000004460	eaf1	ENSPFOP00000004460	ENSPFOP00000018493	Uncharacterized protein.	ELL associated factor 1.	0.997
ENSPFOP00000004460	eaf2	ENSPFOP00000004460	ENSPFOP00000016154	Uncharacterized protein.	ELL associated factor 2.	0.917
ENSPFOP00000004460	ell	ENSPFOP00000004460	ENSPFOP00000001845	Uncharacterized protein.	Elongation factor RNA polymerase II.	0.917
ENSPFOP00000004460	mllt1	ENSPFOP00000004460	ENSPFOP00000014733	Uncharacterized protein.	MLLT1 super elongation complex subunit a.	0.954
ENSPFOP00000004460	mllt3	ENSPFOP00000004460	ENSPFOP00000004974	Uncharacterized protein.	MLLT3 super elongation complex subunit.	0.954
ENSPFOP00000030851	ENSPFOP00000004460	ENSPFOP00000030851	ENSPFOP00000004460	Uncharacterized protein.	Uncharacterized protein.	0.954
ENSPFOP00000030851	aff4	ENSPFOP00000030851	ENSPFOP00000007272	Uncharacterized protein.	AF4/FMR2 family, member 4.	0.943
ENSPFOP00000030851	ccnt2	ENSPFOP00000030851	ENSPFOP00000000178	Uncharacterized protein.	Cyclin T2; Belongs to the cyclin family.	0.794
ENSPFOP00000030851	cdk9	ENSPFOP00000030851	ENSPFOP00000005331	Uncharacterized protein.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.946
ENSPFOP00000030851	eaf1	ENSPFOP00000030851	ENSPFOP00000018493	Uncharacterized protein.	ELL associated factor 1.	0.947
ENSPFOP00000030851	eaf2	ENSPFOP00000030851	ENSPFOP00000016154	Uncharacterized protein.	ELL associated factor 2.	0.888
ENSPFOP00000030851	ell	ENSPFOP00000030851	ENSPFOP00000001845	Uncharacterized protein.	Elongation factor RNA polymerase II.	0.813
aff4	ENSPFOP00000004460	ENSPFOP00000007272	ENSPFOP00000004460	AF4/FMR2 family, member 4.	Uncharacterized protein.	0.984
aff4	ENSPFOP00000030851	ENSPFOP00000007272	ENSPFOP00000030851	AF4/FMR2 family, member 4.	Uncharacterized protein.	0.943
aff4	ccnt2	ENSPFOP00000007272	ENSPFOP00000000178	AF4/FMR2 family, member 4.	Cyclin T2; Belongs to the cyclin family.	0.995
aff4	cdk9	ENSPFOP00000007272	ENSPFOP00000005331	AF4/FMR2 family, member 4.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.999