Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ppt2Palmitoyl-protein thioesterase 2. (301 aa)    
Predicted Functional Partners:
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
     
0.929
mecr
Mitochondrial trans-2-enoyl-CoA reductase.
    
 0.903
LOC103154662
Zgc:66024.
  
  
 
0.902
ENSPFOP00000002452
Seryl-tRNA synthetase 2, mitochondrial.
   
   0.763
ENSPFOP00000030493
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.757
zdhhc7
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.694
DDAH1
Dimethylarginine dimethylaminohydrolase 1.
      
 0.687
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
      
 0.684
mtrf1
Mitochondrial translational release factor 1.
      
 0.678
LOC103134529
Solute carrier family 25 member 44a; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.678
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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