Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001871Homeobox C5a. (224 aa)    
Predicted Functional Partners:
HOXA7
Homeobox A7.
   
   0.964
hoxc4
Homeobox C4a.
   
 
 0.951
ENSPFOP00000018267
Homeobox B5b.
   
   0.942
LOC103155864
Homeobox domain-containing protein.
   
   0.942
hoxc6
Homeobox C6a.
   
 
 0.941
ENSPFOP00000014027
Homeobox D4a.
   
 
 0.898
LOC103155863
Homeobox domain-containing protein.
   
 
 0.828
HOXB6
Homeobox B6.
   
 
 0.828
ENSPFOP00000030966
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
  0.810
ENSPFOP00000001861
Homeobox B4a.
   
   0.788
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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