hoxc8 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

hoxc8

Homeobox C10a. (396 aa)

Predicted Functional Partners:

hoxa9

0.863

LOC103134318

0.766

hoxa5

0.706

LOC103140455

0.625

hoxa2

0.589

hoxb2

0.583

hoxc11

0.537

hoxd11

0.537

ENSPFOP00000025459

0.537

LOC103150375

0.511

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000025459	LOC103134318	ENSPFOP00000025459	ENSPFOP00000030711	Homeobox A11a.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.424
ENSPFOP00000025459	hoxc8	ENSPFOP00000025459	ENSPFOP00000001913	Homeobox A11a.	Homeobox C10a.	0.537
LOC103134318	ENSPFOP00000025459	ENSPFOP00000030711	ENSPFOP00000025459	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox A11a.	0.424
LOC103134318	hoxa9	ENSPFOP00000030711	ENSPFOP00000002429	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.762
LOC103134318	hoxc11	ENSPFOP00000030711	ENSPFOP00000001916	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox C11a.	0.424
LOC103134318	hoxc8	ENSPFOP00000030711	ENSPFOP00000001913	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox C10a.	0.766
LOC103134318	hoxd11	ENSPFOP00000030711	ENSPFOP00000023472	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox D11a.	0.435
LOC103140455	hoxc8	ENSPFOP00000015394	ENSPFOP00000001913	Homeobox protein engrailed-like.	Homeobox C10a.	0.625
LOC103150375	hoxa5	ENSPFOP00000003635	ENSPFOP00000002479	Homeobox A2b.	Homeobox A5a.	0.631
LOC103150375	hoxc8	ENSPFOP00000003635	ENSPFOP00000001913	Homeobox A2b.	Homeobox C10a.	0.511
hoxa2	hoxa5	ENSPFOP00000028200	ENSPFOP00000002479	Homeobox domain-containing protein.	Homeobox A5a.	0.633
hoxa2	hoxc8	ENSPFOP00000028200	ENSPFOP00000001913	Homeobox domain-containing protein.	Homeobox C10a.	0.589
hoxa5	LOC103150375	ENSPFOP00000002479	ENSPFOP00000003635	Homeobox A5a.	Homeobox A2b.	0.631
hoxa5	hoxa2	ENSPFOP00000002479	ENSPFOP00000028200	Homeobox A5a.	Homeobox domain-containing protein.	0.633
hoxa5	hoxb2	ENSPFOP00000002479	ENSPFOP00000001890	Homeobox A5a.	Homeobox B2a.	0.652
hoxa5	hoxc8	ENSPFOP00000002479	ENSPFOP00000001913	Homeobox A5a.	Homeobox C10a.	0.706
hoxa9	LOC103134318	ENSPFOP00000002429	ENSPFOP00000030711	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.762
hoxa9	hoxc8	ENSPFOP00000002429	ENSPFOP00000001913	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox C10a.	0.863
hoxb2	hoxa5	ENSPFOP00000001890	ENSPFOP00000002479	Homeobox B2a.	Homeobox A5a.	0.652
hoxb2	hoxc8	ENSPFOP00000001890	ENSPFOP00000001913	Homeobox B2a.	Homeobox C10a.	0.583