Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155317Uncharacterized protein. (2543 aa)    
Predicted Functional Partners:
LOC103130290
Filamin binding LIM protein 1.
   
 0.927
map2k4
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
    
 0.919
FLNB
Filamin B.
  
  
 
0.901
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.866
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.862
LOC103142160
Integrin beta; Belongs to the integrin beta chain family.
    
 0.862
ENSPFOP00000001435
Integrin, alpha V; Belongs to the integrin alpha chain family.
   
 0.841
ENSPFOP00000003541
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
 0.841
ENSPFOP00000004257
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.841
LOC103139150
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.841
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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