Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxc11Homeobox C11a. (328 aa)    
Predicted Functional Partners:
ENSPFOP00000015048
Meis homeobox 2a.
    
 
 0.633
sall1
Spalt-like transcription factor 1a.
    
 
 0.538
sall3
Spalt-like transcription factor 3a.
    
 
 0.538
hoxc8
Homeobox C10a.
   
  
 0.537
hand2
Heart and neural crest derivatives expressed 2.
    
 
 0.536
rara
Retinoic acid receptor, alpha a.
    
 
 0.507
hoxd10
Homeobox D10a.
   
  
 0.499
hoxc4
Homeobox C4a.
   
 
 0.489
hoxc9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
 0.457
ENSPFOP00000006175
Uncharacterized protein.
      
 0.430
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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