Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc39a13Solute carrier family 39 member 13. (380 aa)    
Predicted Functional Partners:
ecm1
Uncharacterized protein.
      
 0.902
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.889
slc30a4
Solute carrier family 30 member 4.
   
 0.821
slc39a9
Solute carrier family 39 member 9.
    
 
 0.811
slc30a5
Solute carrier family 30 member 5.
   
 0.787
slc30a7
Solute carrier family 30 member 7.
   
 0.780
ENSPFOP00000023701
Uncharacterized protein.
   
 0.741
ENSPFOP00000031011
Uncharacterized protein.
   
 0.741
ENSPFOP00000013953
Solute carrier family 30 member 2.
    
 
 0.727
slc30a9
Solute carrier family 30 member 9.
     
 0.724
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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