Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
gucd1Guanylyl cyclase domain containing 1. (227 aa)    
Predicted Functional Partners:
dctn4
Dynactin 4.
      
 0.742
upb1
Ureidopropionase, beta.
      
 0.720
clu
Clusterin; Belongs to the clusterin family.
      
 0.713
dmgdh
Dimethylglycine dehydrogenase.
      
 0.689
ngly1
N-glycanase 1.
   
   0.669
sec63
SEC63 homolog, protein translocation regulator.
      
 0.631
ostm1
Osteoclastogenesis associated transmembrane protein 1.
      
 0.619
p2rx5
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.615
ENSPFOP00000013582
Forkhead box N4.
      
 0.608
LOC103133201
AFG1 like ATPase a.
      
 0.568
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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