Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mycbpUncharacterized protein. (104 aa)    
Predicted Functional Partners:
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.854
mycbpap
Mycbp associated protein.
    
 
 0.849
akap1
A kinase (PRKA) anchor protein 1b.
    
 
 0.741
pgk1
Phosphoglycerate kinase.
    
 
 0.720
polr3e
Polymerase (RNA) III (DNA directed) polypeptide E.
      
 0.711
yars1
Tyrosine--tRNA ligase.
      
 0.693
ENSPFOP00000005869
Vac14 homolog (S. cerevisiae).
      
 0.681
ENSPFOP00000015912
WD repeat domain 90.
    
   0.673
wrap53
WD repeat containing, antisense to TP53.
      
 0.650
ENSPFOP00000024133
Uncharacterized protein.
      
 0.642
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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