Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tube1Tubulin, epsilon 1; Belongs to the tubulin family. (474 aa)    
Predicted Functional Partners:
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
   
 0.964
ENSPFOP00000003392
Fibrinogen C-terminal domain-containing protein.
    
   0.865
LOC103155772
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.817
tcp1
T-complex 1.
   
 0.808
ENSPFOP00000015912
WD repeat domain 90.
   
 0.786
cct2
Chaperonin containing TCP1, subunit 2 (beta).
   
 0.752
il1r2
Interleukin 1 receptor type 2.
    
 
 0.737
ENSPFOP00000018348
Chaperonin containing TCP1, subunit 8 (theta).
   
 0.734
LOC103155071
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.728
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.724
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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