Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001985Si:dkey-34f9.3. (207 aa)    
Predicted Functional Partners:
ENSPFOP00000016481
Hdc homolog, cell cycle regulator.
      
 0.684
ENSPFOP00000015084
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
      
 0.646
nudt6
Nudix (nucleoside diphosphate linked moiety X)-type motif 6.
      
 0.584
dph6
Diphthamine biosynthesis 6.
      
 0.583
LOC103150493
LIM-domain binding 1b.
    
 0.509
LOC103152234
LIM domain binding 1a.
    
 0.509
LOC103137320
LIM domain binding 2a.
    
 0.509
LOC103149824
Transcription factor 3b.
    
 0.498
LOC103155692
BHLH domain-containing protein.
    
 0.498
TCF3
Transcription factor 3a.
    
 0.498
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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